plugin colocalize spots Search Results


99
Oxford Instruments triple spots colocalization imaris plugin
Whole-Brain-Scale Mapping of PSD95 and SAP102 (A) PSD95 (green) and SAP102 (magenta) expression in stitched down-sampled images of five coronal sections (S1–S5). Bregma (β) level is indicated. (B) PSD95 and SAP102 synaptome parameters in ARA anatomical subregions. Parameter units are as follows: density, number of puncta per 100 μm 2 ; size, μm 2 ; intensity, mean gray value per punctum (AU × 10 4 ); <t>colocalization,</t> %. (C) Synaptome maps of delineated regions in five sections. Median punctum density (i), intensity (ii), size (iii), and colocalization (iv) for PSD95 (top) and SAP102 (bottom) are shown. Parameter units: density, number of puncta per 100 μm 2 ; intensity, mean gray value per punctum (AU); size, μm 2 ; colocalization, %. (D) PSD95 punctum intensity in delineated subregions of the hippocampus and cortex. CA1, cornu ammonis; CX, isocortex; DG, dentate gyrus. (E) SAP102 punctum intensity in delineated subregions of hippocampus and cortex. (F) Similarity matrix between pairs of subregions (rows and columns). White lines outline three major blocks (cerebrum, brainstem, and cerebellum). Pink box highlights hippocampal subregions. (G) Dendrogram showing hierarchical organization of subregions based on their similarity. Branch tips represent delineated subregions, colored as in (B).
Triple Spots Colocalization Imaris Plugin, supplied by Oxford Instruments, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Columbus Instruments clams hc comprehensive lab animal monitoring system for home cages
Whole-Brain-Scale Mapping of PSD95 and SAP102 (A) PSD95 (green) and SAP102 (magenta) expression in stitched down-sampled images of five coronal sections (S1–S5). Bregma (β) level is indicated. (B) PSD95 and SAP102 synaptome parameters in ARA anatomical subregions. Parameter units are as follows: density, number of puncta per 100 μm 2 ; size, μm 2 ; intensity, mean gray value per punctum (AU × 10 4 ); <t>colocalization,</t> %. (C) Synaptome maps of delineated regions in five sections. Median punctum density (i), intensity (ii), size (iii), and colocalization (iv) for PSD95 (top) and SAP102 (bottom) are shown. Parameter units: density, number of puncta per 100 μm 2 ; intensity, mean gray value per punctum (AU); size, μm 2 ; colocalization, %. (D) PSD95 punctum intensity in delineated subregions of the hippocampus and cortex. CA1, cornu ammonis; CX, isocortex; DG, dentate gyrus. (E) SAP102 punctum intensity in delineated subregions of hippocampus and cortex. (F) Similarity matrix between pairs of subregions (rows and columns). White lines outline three major blocks (cerebrum, brainstem, and cerebellum). Pink box highlights hippocampal subregions. (G) Dendrogram showing hierarchical organization of subregions based on their similarity. Branch tips represent delineated subregions, colored as in (B).
Clams Hc Comprehensive Lab Animal Monitoring System For Home Cages, supplied by Columbus Instruments, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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MathWorks Inc spots colocalize matlab plugin
Whole-Brain-Scale Mapping of PSD95 and SAP102 (A) PSD95 (green) and SAP102 (magenta) expression in stitched down-sampled images of five coronal sections (S1–S5). Bregma (β) level is indicated. (B) PSD95 and SAP102 synaptome parameters in ARA anatomical subregions. Parameter units are as follows: density, number of puncta per 100 μm 2 ; size, μm 2 ; intensity, mean gray value per punctum (AU × 10 4 ); <t>colocalization,</t> %. (C) Synaptome maps of delineated regions in five sections. Median punctum density (i), intensity (ii), size (iii), and colocalization (iv) for PSD95 (top) and SAP102 (bottom) are shown. Parameter units: density, number of puncta per 100 μm 2 ; intensity, mean gray value per punctum (AU); size, μm 2 ; colocalization, %. (D) PSD95 punctum intensity in delineated subregions of the hippocampus and cortex. CA1, cornu ammonis; CX, isocortex; DG, dentate gyrus. (E) SAP102 punctum intensity in delineated subregions of hippocampus and cortex. (F) Similarity matrix between pairs of subregions (rows and columns). White lines outline three major blocks (cerebrum, brainstem, and cerebellum). Pink box highlights hippocampal subregions. (G) Dendrogram showing hierarchical organization of subregions based on their similarity. Branch tips represent delineated subregions, colored as in (B).
Spots Colocalize Matlab Plugin, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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MathWorks Inc plugin colocalize spots
Whole-Brain-Scale Mapping of PSD95 and SAP102 (A) PSD95 (green) and SAP102 (magenta) expression in stitched down-sampled images of five coronal sections (S1–S5). Bregma (β) level is indicated. (B) PSD95 and SAP102 synaptome parameters in ARA anatomical subregions. Parameter units are as follows: density, number of puncta per 100 μm 2 ; size, μm 2 ; intensity, mean gray value per punctum (AU × 10 4 ); <t>colocalization,</t> %. (C) Synaptome maps of delineated regions in five sections. Median punctum density (i), intensity (ii), size (iii), and colocalization (iv) for PSD95 (top) and SAP102 (bottom) are shown. Parameter units: density, number of puncta per 100 μm 2 ; intensity, mean gray value per punctum (AU); size, μm 2 ; colocalization, %. (D) PSD95 punctum intensity in delineated subregions of the hippocampus and cortex. CA1, cornu ammonis; CX, isocortex; DG, dentate gyrus. (E) SAP102 punctum intensity in delineated subregions of hippocampus and cortex. (F) Similarity matrix between pairs of subregions (rows and columns). White lines outline three major blocks (cerebrum, brainstem, and cerebellum). Pink box highlights hippocampal subregions. (G) Dendrogram showing hierarchical organization of subregions based on their similarity. Branch tips represent delineated subregions, colored as in (B).
Plugin Colocalize Spots, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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plugin colocalize spots - by Bioz Stars, 2026-03
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MathWorks Inc matlab-based plugin
Whole-Brain-Scale Mapping of PSD95 and SAP102 (A) PSD95 (green) and SAP102 (magenta) expression in stitched down-sampled images of five coronal sections (S1–S5). Bregma (β) level is indicated. (B) PSD95 and SAP102 synaptome parameters in ARA anatomical subregions. Parameter units are as follows: density, number of puncta per 100 μm 2 ; size, μm 2 ; intensity, mean gray value per punctum (AU × 10 4 ); <t>colocalization,</t> %. (C) Synaptome maps of delineated regions in five sections. Median punctum density (i), intensity (ii), size (iii), and colocalization (iv) for PSD95 (top) and SAP102 (bottom) are shown. Parameter units: density, number of puncta per 100 μm 2 ; intensity, mean gray value per punctum (AU); size, μm 2 ; colocalization, %. (D) PSD95 punctum intensity in delineated subregions of the hippocampus and cortex. CA1, cornu ammonis; CX, isocortex; DG, dentate gyrus. (E) SAP102 punctum intensity in delineated subregions of hippocampus and cortex. (F) Similarity matrix between pairs of subregions (rows and columns). White lines outline three major blocks (cerebrum, brainstem, and cerebellum). Pink box highlights hippocampal subregions. (G) Dendrogram showing hierarchical organization of subregions based on their similarity. Branch tips represent delineated subregions, colored as in (B).
Matlab Based Plugin, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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MathWorks Inc plugin find colocalizing spots
Whole-Brain-Scale Mapping of PSD95 and SAP102 (A) PSD95 (green) and SAP102 (magenta) expression in stitched down-sampled images of five coronal sections (S1–S5). Bregma (β) level is indicated. (B) PSD95 and SAP102 synaptome parameters in ARA anatomical subregions. Parameter units are as follows: density, number of puncta per 100 μm 2 ; size, μm 2 ; intensity, mean gray value per punctum (AU × 10 4 ); <t>colocalization,</t> %. (C) Synaptome maps of delineated regions in five sections. Median punctum density (i), intensity (ii), size (iii), and colocalization (iv) for PSD95 (top) and SAP102 (bottom) are shown. Parameter units: density, number of puncta per 100 μm 2 ; intensity, mean gray value per punctum (AU); size, μm 2 ; colocalization, %. (D) PSD95 punctum intensity in delineated subregions of the hippocampus and cortex. CA1, cornu ammonis; CX, isocortex; DG, dentate gyrus. (E) SAP102 punctum intensity in delineated subregions of hippocampus and cortex. (F) Similarity matrix between pairs of subregions (rows and columns). White lines outline three major blocks (cerebrum, brainstem, and cerebellum). Pink box highlights hippocampal subregions. (G) Dendrogram showing hierarchical organization of subregions based on their similarity. Branch tips represent delineated subregions, colored as in (B).
Plugin Find Colocalizing Spots, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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MathWorks Inc matlab plugin
Whole-Brain-Scale Mapping of PSD95 and SAP102 (A) PSD95 (green) and SAP102 (magenta) expression in stitched down-sampled images of five coronal sections (S1–S5). Bregma (β) level is indicated. (B) PSD95 and SAP102 synaptome parameters in ARA anatomical subregions. Parameter units are as follows: density, number of puncta per 100 μm 2 ; size, μm 2 ; intensity, mean gray value per punctum (AU × 10 4 ); <t>colocalization,</t> %. (C) Synaptome maps of delineated regions in five sections. Median punctum density (i), intensity (ii), size (iii), and colocalization (iv) for PSD95 (top) and SAP102 (bottom) are shown. Parameter units: density, number of puncta per 100 μm 2 ; intensity, mean gray value per punctum (AU); size, μm 2 ; colocalization, %. (D) PSD95 punctum intensity in delineated subregions of the hippocampus and cortex. CA1, cornu ammonis; CX, isocortex; DG, dentate gyrus. (E) SAP102 punctum intensity in delineated subregions of hippocampus and cortex. (F) Similarity matrix between pairs of subregions (rows and columns). White lines outline three major blocks (cerebrum, brainstem, and cerebellum). Pink box highlights hippocampal subregions. (G) Dendrogram showing hierarchical organization of subregions based on their similarity. Branch tips represent delineated subregions, colored as in (B).
Matlab Plugin, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Carl Zeiss immersol® immersion oil
Whole-Brain-Scale Mapping of PSD95 and SAP102 (A) PSD95 (green) and SAP102 (magenta) expression in stitched down-sampled images of five coronal sections (S1–S5). Bregma (β) level is indicated. (B) PSD95 and SAP102 synaptome parameters in ARA anatomical subregions. Parameter units are as follows: density, number of puncta per 100 μm 2 ; size, μm 2 ; intensity, mean gray value per punctum (AU × 10 4 ); <t>colocalization,</t> %. (C) Synaptome maps of delineated regions in five sections. Median punctum density (i), intensity (ii), size (iii), and colocalization (iv) for PSD95 (top) and SAP102 (bottom) are shown. Parameter units: density, number of puncta per 100 μm 2 ; intensity, mean gray value per punctum (AU); size, μm 2 ; colocalization, %. (D) PSD95 punctum intensity in delineated subregions of the hippocampus and cortex. CA1, cornu ammonis; CX, isocortex; DG, dentate gyrus. (E) SAP102 punctum intensity in delineated subregions of hippocampus and cortex. (F) Similarity matrix between pairs of subregions (rows and columns). White lines outline three major blocks (cerebrum, brainstem, and cerebellum). Pink box highlights hippocampal subregions. (G) Dendrogram showing hierarchical organization of subregions based on their similarity. Branch tips represent delineated subregions, colored as in (B).
Immersol® Immersion Oil, supplied by Carl Zeiss, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Carl Zeiss immersol ® immersion oil
Whole-Brain-Scale Mapping of PSD95 and SAP102 (A) PSD95 (green) and SAP102 (magenta) expression in stitched down-sampled images of five coronal sections (S1–S5). Bregma (β) level is indicated. (B) PSD95 and SAP102 synaptome parameters in ARA anatomical subregions. Parameter units are as follows: density, number of puncta per 100 μm 2 ; size, μm 2 ; intensity, mean gray value per punctum (AU × 10 4 ); <t>colocalization,</t> %. (C) Synaptome maps of delineated regions in five sections. Median punctum density (i), intensity (ii), size (iii), and colocalization (iv) for PSD95 (top) and SAP102 (bottom) are shown. Parameter units: density, number of puncta per 100 μm 2 ; intensity, mean gray value per punctum (AU); size, μm 2 ; colocalization, %. (D) PSD95 punctum intensity in delineated subregions of the hippocampus and cortex. CA1, cornu ammonis; CX, isocortex; DG, dentate gyrus. (E) SAP102 punctum intensity in delineated subregions of hippocampus and cortex. (F) Similarity matrix between pairs of subregions (rows and columns). White lines outline three major blocks (cerebrum, brainstem, and cerebellum). Pink box highlights hippocampal subregions. (G) Dendrogram showing hierarchical organization of subregions based on their similarity. Branch tips represent delineated subregions, colored as in (B).
Immersol ® Immersion Oil, supplied by Carl Zeiss, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Carl Zeiss lsm 980 airyscan confocal microscope
Whole-Brain-Scale Mapping of PSD95 and SAP102 (A) PSD95 (green) and SAP102 (magenta) expression in stitched down-sampled images of five coronal sections (S1–S5). Bregma (β) level is indicated. (B) PSD95 and SAP102 synaptome parameters in ARA anatomical subregions. Parameter units are as follows: density, number of puncta per 100 μm 2 ; size, μm 2 ; intensity, mean gray value per punctum (AU × 10 4 ); <t>colocalization,</t> %. (C) Synaptome maps of delineated regions in five sections. Median punctum density (i), intensity (ii), size (iii), and colocalization (iv) for PSD95 (top) and SAP102 (bottom) are shown. Parameter units: density, number of puncta per 100 μm 2 ; intensity, mean gray value per punctum (AU); size, μm 2 ; colocalization, %. (D) PSD95 punctum intensity in delineated subregions of the hippocampus and cortex. CA1, cornu ammonis; CX, isocortex; DG, dentate gyrus. (E) SAP102 punctum intensity in delineated subregions of hippocampus and cortex. (F) Similarity matrix between pairs of subregions (rows and columns). White lines outline three major blocks (cerebrum, brainstem, and cerebellum). Pink box highlights hippocampal subregions. (G) Dendrogram showing hierarchical organization of subregions based on their similarity. Branch tips represent delineated subregions, colored as in (B).
Lsm 980 Airyscan Confocal Microscope, supplied by Carl Zeiss, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Carl Zeiss fast airyscan module
Whole-Brain-Scale Mapping of PSD95 and SAP102 (A) PSD95 (green) and SAP102 (magenta) expression in stitched down-sampled images of five coronal sections (S1–S5). Bregma (β) level is indicated. (B) PSD95 and SAP102 synaptome parameters in ARA anatomical subregions. Parameter units are as follows: density, number of puncta per 100 μm 2 ; size, μm 2 ; intensity, mean gray value per punctum (AU × 10 4 ); <t>colocalization,</t> %. (C) Synaptome maps of delineated regions in five sections. Median punctum density (i), intensity (ii), size (iii), and colocalization (iv) for PSD95 (top) and SAP102 (bottom) are shown. Parameter units: density, number of puncta per 100 μm 2 ; intensity, mean gray value per punctum (AU); size, μm 2 ; colocalization, %. (D) PSD95 punctum intensity in delineated subregions of the hippocampus and cortex. CA1, cornu ammonis; CX, isocortex; DG, dentate gyrus. (E) SAP102 punctum intensity in delineated subregions of hippocampus and cortex. (F) Similarity matrix between pairs of subregions (rows and columns). White lines outline three major blocks (cerebrum, brainstem, and cerebellum). Pink box highlights hippocampal subregions. (G) Dendrogram showing hierarchical organization of subregions based on their similarity. Branch tips represent delineated subregions, colored as in (B).
Fast Airyscan Module, supplied by Carl Zeiss, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Carl Zeiss lsm880 confocal microscope
Whole-Brain-Scale Mapping of PSD95 and SAP102 (A) PSD95 (green) and SAP102 (magenta) expression in stitched down-sampled images of five coronal sections (S1–S5). Bregma (β) level is indicated. (B) PSD95 and SAP102 synaptome parameters in ARA anatomical subregions. Parameter units are as follows: density, number of puncta per 100 μm 2 ; size, μm 2 ; intensity, mean gray value per punctum (AU × 10 4 ); <t>colocalization,</t> %. (C) Synaptome maps of delineated regions in five sections. Median punctum density (i), intensity (ii), size (iii), and colocalization (iv) for PSD95 (top) and SAP102 (bottom) are shown. Parameter units: density, number of puncta per 100 μm 2 ; intensity, mean gray value per punctum (AU); size, μm 2 ; colocalization, %. (D) PSD95 punctum intensity in delineated subregions of the hippocampus and cortex. CA1, cornu ammonis; CX, isocortex; DG, dentate gyrus. (E) SAP102 punctum intensity in delineated subregions of hippocampus and cortex. (F) Similarity matrix between pairs of subregions (rows and columns). White lines outline three major blocks (cerebrum, brainstem, and cerebellum). Pink box highlights hippocampal subregions. (G) Dendrogram showing hierarchical organization of subregions based on their similarity. Branch tips represent delineated subregions, colored as in (B).
Lsm880 Confocal Microscope, supplied by Carl Zeiss, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


Whole-Brain-Scale Mapping of PSD95 and SAP102 (A) PSD95 (green) and SAP102 (magenta) expression in stitched down-sampled images of five coronal sections (S1–S5). Bregma (β) level is indicated. (B) PSD95 and SAP102 synaptome parameters in ARA anatomical subregions. Parameter units are as follows: density, number of puncta per 100 μm 2 ; size, μm 2 ; intensity, mean gray value per punctum (AU × 10 4 ); colocalization, %. (C) Synaptome maps of delineated regions in five sections. Median punctum density (i), intensity (ii), size (iii), and colocalization (iv) for PSD95 (top) and SAP102 (bottom) are shown. Parameter units: density, number of puncta per 100 μm 2 ; intensity, mean gray value per punctum (AU); size, μm 2 ; colocalization, %. (D) PSD95 punctum intensity in delineated subregions of the hippocampus and cortex. CA1, cornu ammonis; CX, isocortex; DG, dentate gyrus. (E) SAP102 punctum intensity in delineated subregions of hippocampus and cortex. (F) Similarity matrix between pairs of subregions (rows and columns). White lines outline three major blocks (cerebrum, brainstem, and cerebellum). Pink box highlights hippocampal subregions. (G) Dendrogram showing hierarchical organization of subregions based on their similarity. Branch tips represent delineated subregions, colored as in (B).

Journal: Neuron

Article Title: Architecture of the Mouse Brain Synaptome

doi: 10.1016/j.neuron.2018.07.007

Figure Lengend Snippet: Whole-Brain-Scale Mapping of PSD95 and SAP102 (A) PSD95 (green) and SAP102 (magenta) expression in stitched down-sampled images of five coronal sections (S1–S5). Bregma (β) level is indicated. (B) PSD95 and SAP102 synaptome parameters in ARA anatomical subregions. Parameter units are as follows: density, number of puncta per 100 μm 2 ; size, μm 2 ; intensity, mean gray value per punctum (AU × 10 4 ); colocalization, %. (C) Synaptome maps of delineated regions in five sections. Median punctum density (i), intensity (ii), size (iii), and colocalization (iv) for PSD95 (top) and SAP102 (bottom) are shown. Parameter units: density, number of puncta per 100 μm 2 ; intensity, mean gray value per punctum (AU); size, μm 2 ; colocalization, %. (D) PSD95 punctum intensity in delineated subregions of the hippocampus and cortex. CA1, cornu ammonis; CX, isocortex; DG, dentate gyrus. (E) SAP102 punctum intensity in delineated subregions of hippocampus and cortex. (F) Similarity matrix between pairs of subregions (rows and columns). White lines outline three major blocks (cerebrum, brainstem, and cerebellum). Pink box highlights hippocampal subregions. (G) Dendrogram showing hierarchical organization of subregions based on their similarity. Branch tips represent delineated subregions, colored as in (B).

Article Snippet: Triple Spots Colocalization – Imaris Plugin , Bitplane , http://open.bitplane.com/tabid/235/Default.aspx?id=91.

Techniques: Expressing

Journal: Neuron

Article Title: Architecture of the Mouse Brain Synaptome

doi: 10.1016/j.neuron.2018.07.007

Figure Lengend Snippet:

Article Snippet: Triple Spots Colocalization – Imaris Plugin , Bitplane , http://open.bitplane.com/tabid/235/Default.aspx?id=91.

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